{"componentChunkName":"component---src-templates-atlas-page-tsx","path":"/bbi/human-chromatin-during-development/","result":{"data":{"config":{"frontmatter":{"title":"Data Visualization"}},"page":{"html":"","frontmatter":{"title":"BBI Human Chromatin Accessibility Atlas","description":"BBI Human Chromatin Accessibility Atlas","keywords":"Fred Hutch Data Visualization Brotman Baty","background":"/img/bg-nygc.jpg","icon":"https://brotmanbaty.org/wp-content/uploads/2018/06/Logo-square.png","footer":"{ \"logo\": [ {\"src\":\"/img/logos/footer-gray-aicl.png\",\"href\":\"https:\\/\\/www.allen-lineage.org/\"}, {\"src\":\"/img/logos/footer-gray-bbi.png\",\"href\":\"https:\\/\\/brotmanbaty.org/\"}, {\"src\":\"/img/logos/footer-gray-uwgs.png\",\"href\":\"https:\\/\\/www.gs.washington.edu/\"} ], \"twitter\": \"https://twitter.com/FHDataViz\", \"linkedin\": \"https://www.linkedin.com/company/fhdataviz\", \"instagram\": \"https://www.instagram.com/fhdataviz/\" }","models":[{"name":"metadata","type":"json","url":"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/all_attr_columns2.json"},{"name":"tissues","type":"csv","url":"https://atlas.fredhutch.org/data/bbi/descartes/tissues.csv"}],"transforms":[{"outputs":"[\"tissues\"]","steps":"[ {\"name\": \"tissues\", \"fn\": \"flatten\", \"data\": \"tissues\" } ]"}],"components":[{"component":"atlas-marquee","props":"{ \"title\": \"descartes\", \"subtitle\": \"Human Chromatin Accessibility During Development\", \"link\": \"/\" }"},{"component":"atlas-search","props":"{ \"title\": \"Search Tissues\", \"logo\": \"/img/atlas-logo-human.png\", \"paper\": \"https://doi.org/10.1126/science.aba7612\", \"protocol\": \"https://www.protocols.io/view/sci-atac-seq3-be8mjhu6\", \"tissue\": \"tissues\", \"showTissueButton\": true, \"linkTissue\": \"/bbi/human-chromatin-during-development/dataset/{tissue}\" }"},{"component":"atlas-datasets","props":"{ \"title\": \"\", \"text\": \"Select a tissue below to view cell type composition,  differential chromatin accessibility and more.\", \"img\": \"/img/atlas-logo-human.png\", \"name\": \"Atlas\", \"unit\": \"Cells In\", \"val\": 720613, \"links\": [ { \"name\": \"Adrenal\", \"val\": 63958, \"url\": \"/bbi/human-chromatin-during-development/dataset/Adrenal\", \"sprite\": \"adrenal\" }, { \"name\": \"Cerebellum\", \"val\": 3313, \"url\": \"/bbi/human-chromatin-during-development/dataset/Cerebellum\", \"sprite\": \"cortex\" }, { \"name\": \"Cerebrum\", \"val\": 85261, \"url\": \"/bbi/human-chromatin-during-development/dataset/Cerebrum\", \"sprite\": \"brain\" }, { \"name\": \"Eye\", \"val\": 9712, \"url\": \"/bbi/human-chromatin-during-development/dataset/Eye\", \"sprite\": \"eye\" }, { \"name\": \"Heart\", \"val\": 79248, \"url\": \"/bbi/human-chromatin-during-development/dataset/Heart\", \"sprite\": \"heart\" }, { \"name\": \"Intestine\", \"val\": 42942, \"url\": \"/bbi/human-chromatin-during-development/dataset/Intestine\", \"sprite\": 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3840, \"url\": \"/bbi/human-chromatin-during-development/dataset/Stomach\", \"sprite\": \"stomach\" }, { \"name\": \"Thymus\", \"val\": 21499, \"url\": \"/bbi/human-chromatin-during-development/dataset/Thymus\", \"sprite\": \"thymus\" } ]}"},{"component":"atlas-scatter-2d","props":"{ \"title\": \"UMAP of Sampled Data\", \"default\": { \"projection\": 0, \"dimensions\": 2, \"color\": \"observations/metadata/2\" }, \"colors\": [ { \"type\": \"observations\", \"options\": \"metadata\", \"data\": \"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/all_attr_discrete2.bin\", \"dataType\": \"UI8\" } ], \"projections\": [ { \"title\": \"{0}\", \"coords\": \"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/all_dr_scale.bin\" } ] }"},{"component":"atlas-downloads","props":"{ \"title\": \"Download\", \"sections\": [ { \"headline\": \"Peak Count Sparse Matrices\", \"desc\": \"Sparse peak (row) by cell (column) matrices split by organs.\", \"columns\": [], \"files\": [ { \"name\":\"adrenal_peak_matrix.RDS\", \"desc\":\"Adrenal Peaks\", \"url\":\"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/downloads/adrenal_peak_matrix.RDS\", \"size\":\"780M\", \"type\":\"RDS\", \"date\":\"2019-12-01\" }, { \"name\":\"cerebellum_peak_matrix.RDS\", \"desc\":\"Cerebellum Peaks\", \"url\":\"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/downloads/cerebellum_peak_matrix.RDS\", \"size\":\"59M\", \"type\":\"RDS\", \"date\":\"2019-12-01\" }, { \"name\":\"cerebrum_peak_matrix.RDS\", \"desc\":\"Cerebrum Peaks\", \"url\":\"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/downloads/cerebrum_peak_matrix.RDS\", \"size\":\"463M\", \"type\":\"RDS\", \"date\":\"2019-12-01\" }, { \"name\":\"eye_peak_matrix.RDS\", \"desc\":\"Eye Peaks\", \"url\":\"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/downloads/eye_peak_matrix.RDS\", \"size\":\"219M\", \"type\":\"RDS\", \"date\":\"2019-12-01\" }, { \"name\":\"heart_peak_matrix.RDS\", \"desc\":\"Heart 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\"url\":\"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/downloads/lung_peak_matrix.RDS\", \"size\":\"773M\", \"type\":\"RDS\", \"date\":\"2019-12-01\" }, { \"name\":\"muscle_peak_matrix.RDS\", \"desc\":\"Muscle Peaks\", \"url\":\"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/downloads/muscle_peak_matrix.RDS\", \"size\":\"466M\", \"type\":\"RDS\", \"date\":\"2019-12-01\" }, { \"name\":\"pancreas_peak_matrix.RDS\", \"desc\":\"Pancreas Peaks\", \"url\":\"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/downloads/pancreas_peak_matrix.RDS\", \"size\":\"101M\", \"type\":\"RDS\", \"date\":\"2019-12-01\" }, { \"name\":\"placenta_peak_matrix.RDS\", \"desc\":\"Placenta Peaks\", \"url\":\"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/downloads/placenta_peak_matrix.RDS\", \"size\":\"684M\", \"type\":\"RDS\", \"date\":\"2019-12-01\" }, { \"name\":\"spleen_peak_matrix.RDS\", \"desc\":\"Spleen Peaks\", \"url\":\"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/downloads/spleen_peak_matrix.RDS\", \"size\":\"26M\", \"type\":\"RDS\", \"date\":\"2019-12-01\" }, { \"name\":\"stomach_peak_matrix.RDS\", \"desc\":\"Stomach Peaks\", \"url\":\"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/downloads/stomach_peak_matrix.RDS\", \"size\":\"86M\", \"type\":\"RDS\", \"date\":\"2019-12-01\" }, { \"name\":\"thymus_peak_matrix.RDS\", \"desc\":\"Thymus Peaks\", \"url\":\"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/downloads/thymus_peak_matrix.RDS\", \"size\":\"287M\", \"type\":\"RDS\", \"date\":\"2019-12-01\" } ] }, { \"headline\": \"Tissue Data - Seurat Objects\", \"desc\": \"Contain both gene by cell matrix used for cell type annotation (RNA assay) and peak by cell matrix (peaks assay) used for downstream analyses.\", \"columns\": [ [ \"nCount_RNA\", \"number of reads in gene bodies +2kb upstream of TSS\" ], [ \"nFeature_RNA\", \"number of gene bodies + 2 kb upstream of TSS that contain at least one read\" ], [ \"cell\", \"The cell barcode id\" ], [ \"sample_name\", \"The name of the sample name\" ], [ \"donor_id\", \"The ID of the donor\" ], [ \"sex\", \"gender\" ], [ \"tissue\", \"tissue type\" ], [ \"batch\", \"experimental batch\" ], [ \"total\", \"total number of reads\" ], [ \"total_deduplicated\", \"total number of deduplicated reads\" ], [ \"total_deduplicated_peaks\", \"total number of deduplicated reads that fall into peaks\" ], [ \"total_deduplicated_tss\", \"total number of deduplicated reads that fall into a 2 kb window centered on TSS\" ], [ \"frip\", \"fraction of reads in peaks\" ], [ \"[x,y,autosomal]_chrom_window_counts\", \"number of 5 kb windows of the X, Y and autosomal chromosomes respectively containing reads\" ], [ \"blacklist_fraction\", \"fraction of unique reads falling in ENCODE blacklist regions, Louvain cluster ID (resolution = 0.3)\" ], [ \"nFeature_peaks\", \"number of reads in peaks (nCount_peaks)\" ], [ \"nCount_peaks\", \"number of peaks that contain at least one read\" ], [ \"tissue_umap[1,2]\", \"tissue UMAP coordinates based on the peaks assay\" ], [ \"cell_type\", \"assigned cell type\" ], [ \"estimated_postconceptual_age\", \"estimated postconceptual age\" ], [ \"Frit\", \"fraction of reads in 2 kb window centered on TSS\" ], [ \"RNA_snn_res.0.3\", \"Louvain cluster ID at resolution 0.3\" ] ], \"files\": [{ \"name\": \"adrenal_filtered.seurat.for_website.RDS\", \"desc\": \"adrenal cells\", \"url\": \"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/downloads/adrenal_filtered.seurat.for_website.RDS\", \"size\": \"13G\", \"type\": \"RDS\", \"date\": \"2019-12-01\" }, { \"name\": \"cerebellum_filtered.seurat.for_website.RDS\", \"desc\": \"cerebellum cells\", \"url\": \"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/downloads/cerebellum_filtered.seurat.for_website.RDS\", \"size\": \"888M\", \"type\": \"RDS\", \"date\": \"2019-12-01\" }, { \"name\": \"cerebrum_filtered.seurat.for_website.RDS\", \"desc\": \"cerebrum cells\", \"url\": \"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/downloads/cerebrum_filtered.seurat.for_website.RDS\", \"size\": \"8G\", \"type\": \"RDS\", \"date\": \"2019-12-01\" }, { \"name\": \"eye_filtered.seurat.for_website.RDS\", \"desc\": \"eye cells\", \"url\": \"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/downloads/eye_filtered.seurat.for_website.RDS\", \"size\": \"3G\", \"type\": \"RDS\", \"date\": \"2019-12-01\" }, { \"name\": \"heart_filtered.seurat.for_website.RDS\", \"desc\": \"heart cells\", \"url\": \"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/downloads/heart_filtered.seurat.for_website.RDS\", \"size\": \"20G\", \"type\": \"RDS\", \"date\": \"2019-12-01\" }, { \"name\": \"intestine_filtered.seurat.for_website.RDS\", \"desc\": \"intestine cells\", \"url\": \"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/downloads/intestine_filtered.seurat.for_website.RDS\", \"size\": \"8.08G\", \"type\": \"RDS\", \"date\": \"2019-12-01\" }, { \"name\": \"kidney_filtered.seurat.for_website.RDS\", \"desc\": \"kidney cells\", \"url\": \"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/downloads/kidney_filtered.seurat.for_website.RDS\", \"size\": \"19G\", \"type\": \"RDS\", \"date\": \"2019-12-01\" }, { \"name\": \"liver_filtered.seurat.for_website.RDS\", \"desc\": \"liver cells\", \"url\": \"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/downloads/liver_filtered.seurat.for_website.RDS\", \"size\": \"19G\", \"type\": \"RDS\", \"date\": \"2019-12-01\" }, { \"name\": \"lung_filtered.seurat.for_website.RDS\", \"desc\": \"lung cells\", \"url\": \"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/downloads/lung_filtered.seurat.for_website.RDS\", \"size\": \"12G\", \"type\": \"RDS\", \"date\": \"2019-12-01\" }, { \"name\": \"muscle_filtered.seurat.for_website.RDS\", \"desc\": \"muscle cells\", \"url\": \"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/downloads/muscle_filtered.seurat.for_website.RDS\", \"size\": \"7G\", \"type\": \"RDS\", \"date\": \"2019-12-01\" }, { \"name\": \"pancreas_filtered.seurat.for_website.RDS\", \"desc\": \"pancreas cells\", \"url\": \"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/downloads/pancreas_filtered.seurat.for_website.RDS\", \"size\": \"1.3G\", \"type\": \"RDS\", \"date\": \"2019-12-01\" }, { \"name\": \"placenta_filtered.seurat.for_website.RDS\", \"desc\": \"placenta cells\", \"url\": \"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/downloads/placenta_filtered.seurat.for_website.RDS\", \"size\": \"11G\", \"type\": \"RDS\", \"date\": \"2019-12-01\" }, { \"name\": \"spleen_filtered.seurat.for_website.RDS\", \"desc\": \"spleen cells\", \"url\": \"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/downloads/spleen_filtered.seurat.for_website.RDS\", \"size\": \"403M\", \"type\": \"RDS\", \"date\": \"2019-12-01\" }, { \"name\": \"stomach_filtered.seurat.for_website.RDS\", \"desc\": \"stomach cells\", \"url\": \"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/downloads/stomach_filtered.seurat.for_website.RDS\", \"size\": \"1.2G\", \"type\": \"RDS\", \"date\": \"2019-12-01\" }, { \"name\": \"thymus_filtered.seurat.for_website.RDS\", \"desc\": \"thymus cells\", \"url\": \"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/downloads/thymus_filtered.seurat.for_website.RDS\", \"size\": \"4.6G\", \"type\": \"RDS\", \"date\": \"2019-12-01\" }\n] }, { \"headline\": \"Sampled Data\", \"desc\": \"To compare cell types across organs, up to 800 cells were randomly sampled per cell type per tissue (or in cases where less than 800 cells of a given cell type were represented in a given tissue, all cells were taken). Seurat object contains peak by cell matrix for 86,685 cells and 1,001,437 peaks (z-score filtered master list) in the peaks assay and the gene by cell matrix in the RNA assay.\", \"columns\": [], \"files\": [{ \"name\": \"all_celltypes.downsampled.filtered.RDS\", \"desc\": \"sampled cells\", \"url\": \"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/downloads/all_celltypes.downsampled.filtered.RDS\", \"size\": \"6.6G\", \"type\": \"RDS\", \"date\": \"2019-12-01\" }] }, { \"headline\": \"Cell Metadata\", \"desc\": \"Cell metadata for all cells, including tissue of origin, donor ID, estimated gestational age, sex, experimental batch, total number of reads, total number of deduplicated reads, total number of deduplicated reads that fall into peaks, total number of deduplicated reads that fall into a 2 kb window centered on TSS, fraction of reads in peaks (frip), fraction of reads in 2 kb window centered on TSS (frit), number of peaks that contain at least one read (nFeature_peaks), Louvain cluster ID and UMAP coordinates of per tissue (not combined) UMAP visualizations and cell type annotation.\", \"columns\": [], \"files\": [{ \"name\": \"filtered.cell_metadata.for_website.txt.gz\", \"desc\": \"Metadata\", \"url\": \"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/downloads/filtered.cell_metadata.for_website.txt.gz\", \"size\": \"46M\", \"type\": \"TXT\", \"date\": \"2019-12-01\" }\n] }, { \"headline\": \"Masterlist of peaks/regions with motif occurrences\", \"desc\": \"For each region within a merged set of 1.05 M peaks of accessibility the chromosomal location, peak width and motif occurrences for motifs in the JASPAR vertebrate motif database at a p-value threshold of 1e-7 are provided.\", \"columns\": [\n], \"files\": [{ \"name\": \"peak_masterlist_w_motifs.for_website.txt\", \"desc\": \"Peaks / Regions\", \"url\": \"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/downloads/peak_masterlist_w_motifs.for_website.txt.gz\", \"size\": \"1.2G\", \"type\": \"TXT\", \"date\": \"2019-12-01\" }\n] }, { \"headline\": \"Motif enrichment across cell types\", \"desc\": \"For each of the 579 motifs from the JASPAR vertebrate database, the enrichment in accessible sites in each of the main 54 cell types was determined using a linear regression model. Fold-change of the mean motif occurrence in sites of a given cell type relative to the rest of the dataset and matching Benjamini Hochberg-adjusted p-values are reported for each motif-cell type pair.\", \"columns\": [\n], \"files\": [{ \"name\": \"motifs_all_tissues.for_website.csv\", \"desc\": \"Motifs\", \"url\": \"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/downloads/motifs_all_tissues.for_website.csv.tar.gz\", \"size\": \"2.4M\", \"type\": \"CSV\", \"date\": \"2019-12-01\" }] }, { \"headline\": \"Specificity scores\", \"desc\": \"Specificity scores calculated for each region/cell type pair using Jensen-Shannon divergence. A higher score indicates a peak that is more specific to a given cell type.\", \"columns\": [], \"files\": [{ \"name\": \"spec_scores_all_tissues.for_website.csv\", \"desc\": \"Specificity Scores\", \"url\": \"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/downloads/spec_scores_all_tissues.for_website.csv.tar.gz\", \"size\": \"3.8G\", \"type\": \"CSV\", \"date\": \"2019-12-01\" }] }, { \"headline\": \"Cicero scores\", \"desc\":  \"Table of Cicero co-accessibility scores generated for each of 101 cell type/tissue pairs. The first two columns are the coordinates in hg19 of the two tested sites. Each of the remaining columns represents the co-accessibility scores for each of the cell types. NA values indicate that the pair of sites was not tested because of insufficient depth or that the co-accessibility value was less than 0.1.\", \"columns\": [\n], \"files\": [{ \"name\": \"Cicero_coaccessibility_scores_by_cell_type.csv.gz\", \"desc\": \"Cicero\", \"url\": \"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/downloads/Cicero_coaccessibility_scores_by_cell_type.csv.gz\", \"size\": \"410M\", \"type\": \"CSV\", \"date\": \"2019-12-01\" }] }, { \"headline\": \"Cell-type specific accessibility as bigwig files\", \"desc\": \"Fragment endpoints were extended 100 bp in each direction, reads were summed across all cells in a cell type and then normalized to total number of cells per cell type.\", \"columns\": [], \"files\": [{ \"name\": \"adrenal_adrenocortical_cells.bw\", \"desc\": \"adrenal adrenocortical\", \"url\": \"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/bigwig/adrenal_adrenocortical_cells.bw\", \"size\": \"4G\", \"type\": \"bw\", \"date\": \"2020-06-20\" }, { \"name\": \"adrenal_chromaffin_cells.bw\", \"desc\": \"adrenal chromaffin\", \"url\": \"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/bigwig/adrenal_chromaffin_cells.bw\", \"size\": \"429M\", \"type\": \"bw\", \"date\": \"2020-06-20\" }, { \"name\": \"adrenal_erythroblasts.bw\", \"desc\": \"adrenal erythroblasts\", \"url\": \"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/bigwig/adrenal_erythroblasts.bw\", \"size\": \"24M\", \"type\": \"bw\", \"date\": \"2020-06-20\" }, { \"name\": \"adrenal_megakaryocytes_unsure.bw\", \"desc\": \"adrenal megakaryocytes unsure\", \"url\": \"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/bigwig/adrenal_megakaryocytes_unsure.bw\", \"size\": \"19M\", \"type\": \"bw\", \"date\": \"2020-06-20\" }, { \"name\": \"adrenal_myeloid_cells.bw\", \"desc\": \"adrenal myeloid\", \"url\": \"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/bigwig/adrenal_myeloid_cells.bw\", \"size\": \"72M\", \"type\": \"bw\", \"date\": \"2020-06-20\" }, { \"name\": \"adrenal_schwann_cells.bw\", \"desc\": \"adrenal schwann\", \"url\": \"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/bigwig/adrenal_schwann_cells.bw\", \"size\": \"94M\", \"type\": \"bw\", \"date\": \"2020-06-20\" }, { \"name\": \"adrenal_stromal_cells.bw\", \"desc\": \"adrenal stromal\", \"url\": \"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/bigwig/adrenal_stromal_cells.bw\", \"size\": \"640M\", \"type\": \"bw\", \"date\": \"2020-06-20\" }, { \"name\": \"adrenal_sympathoblasts.bw\", \"desc\": \"adrenal sympathoblasts\", \"url\": \"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/bigwig/adrenal_sympathoblasts.bw\", \"size\": \"83M\", \"type\": \"bw\", \"date\": \"2020-06-20\" }, { \"name\": \"adrenal_vascular_endothelial_cells.bw\", \"desc\": \"adrenal vascular endothelial\", \"url\": \"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/bigwig/adrenal_vascular_endothelial_cells.bw\", \"size\": 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}, { \"name\": \"muscle_skeletal_muscle_cells_unsure.bw\", \"desc\": \"muscle skeletal muscle unsure\", \"url\": \"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/bigwig/muscle_skeletal_muscle_cells_unsure.bw\", \"size\": \"2G\", \"type\": \"bw\", \"date\": \"2020-06-20\" }, { \"name\": \"muscle_vascular_endothelial_cells.bw\", \"desc\": \"muscle vascular endothelial\", \"url\": \"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/bigwig/muscle_vascular_endothelial_cells.bw\", \"size\": \"504M\", \"type\": \"bw\", \"date\": \"2020-06-20\" }, { \"name\": \"pancreas_acinar_cells.bw\", \"desc\": \"pancreas acinar\", \"url\": \"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/bigwig/pancreas_acinar_cells.bw\", \"size\": \"198M\", \"type\": \"bw\", \"date\": \"2020-06-20\" }, { \"name\": \"pancreas_ductal_cells.bw\", \"desc\": \"pancreas ductal\", \"url\": \"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/bigwig/pancreas_ductal_cells.bw\", \"size\": \"169M\", \"type\": \"bw\", \"date\": \"2020-06-20\" }, { \"name\": \"pancreas_islet_endocrine_cells.bw\", \"desc\": \"pancreas islet endocrine\", \"url\": \"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/bigwig/pancreas_islet_endocrine_cells.bw\", \"size\": \"139M\", \"type\": \"bw\", \"date\": \"2020-06-20\" }, { \"name\": \"pancreas_lymphoid-myeloid_cells.bw\", \"desc\": \"pancreas lymphoid-myeloid\", \"url\": \"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/bigwig/pancreas_lymphoid-myeloid_cells.bw\", \"size\": \"36M\", \"type\": \"bw\", \"date\": \"2020-06-20\" }, { \"name\": \"pancreas_pancreas_unknown.1.bw\", \"desc\": \"pancreas pancreas unknown.1\", \"url\": \"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/bigwig/pancreas_pancreas_unknown.1.bw\", \"size\": \"968M\", \"type\": \"bw\", \"date\": \"2020-06-20\" }, { \"name\": \"pancreas_stromal_cells.bw\", \"desc\": \"pancreas stromal\", \"url\": \"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/bigwig/pancreas_stromal_cells.bw\", \"size\": \"185M\", \"type\": \"bw\", \"date\": \"2020-06-20\" }, { \"name\": \"spleen_megakaryocytes.bw\", \"desc\": \"spleen megakaryocytes\", \"url\": \"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/bigwig/spleen_megakaryocytes.bw\", \"size\": \"74M\", \"type\": \"bw\", \"date\": \"2020-06-20\" }, { \"name\": \"spleen_vascular_endothelial_cells.bw\", \"desc\": \"spleen vascular endothelial\", \"url\": \"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/bigwig/spleen_vascular_endothelial_cells.bw\", \"size\": \"23M\", \"type\": \"bw\", \"date\": \"2020-06-20\" }, { \"name\": \"stomach_ens_glia.bw\", \"desc\": \"stomach ens glia\", \"url\": \"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/bigwig/stomach_ens_glia.bw\", \"size\": \"57M\", \"type\": \"bw\", \"date\": \"2020-06-20\" }, { \"name\": \"stomach_ens_neurons_unsure.bw\", \"desc\": \"stomach ens neurons unsure\", \"url\": \"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/bigwig/stomach_ens_neurons_unsure.bw\", \"size\": \"102M\", \"type\": \"bw\", \"date\": \"2020-06-20\" }, { \"name\": \"stomach_epithelial_cells.bw\", \"desc\": \"stomach epithelial\", \"url\": \"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/bigwig/stomach_epithelial_cells.bw\", \"size\": \"439M\", \"type\": \"bw\", \"date\": \"2020-06-20\" }, { \"name\": \"stomach_goblet_cells.bw\", \"desc\": \"stomach goblet\", \"url\": \"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/bigwig/stomach_goblet_cells.bw\", \"size\": \"289M\", \"type\": \"bw\", \"date\": \"2020-06-20\" }, { \"name\": \"stomach_parietal_and_chief_cells.bw\", \"desc\": \"stomach parietal and chief\", \"url\": \"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/bigwig/stomach_parietal_and_chief_cells.bw\", \"size\": \"127M\", \"type\": \"bw\", \"date\": \"2020-06-20\" }, { \"name\": \"stomach_stromal_cells.bw\", \"desc\": \"stomach stromal\", \"url\": \"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/bigwig/stomach_stromal_cells.bw\", \"size\": \"185M\", \"type\": \"bw\", \"date\": \"2020-06-20\" }, { \"name\": \"thymus_antigen_presenting_cells.bw\", \"desc\": \"thymus antigen presenting\", \"url\": \"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/bigwig/thymus_antigen_presenting_cells.bw\", \"size\": \"52M\", \"type\": \"bw\", \"date\": \"2020-06-20\" }, { \"name\": \"thymus_thymic_epithelial_cells.bw\", \"desc\": \"thymus thymic epithelial\", \"url\": \"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/bigwig/thymus_thymic_epithelial_cells.bw\", \"size\": \"95M\", \"type\": \"bw\", \"date\": \"2020-06-20\" }, { \"name\": \"thymus_thymocytes.bw\", \"desc\": \"thymus thymocytes\", \"url\": \"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/bigwig/thymus_thymocytes.bw\", \"size\": \"2G\", \"type\": \"bw\", \"date\": \"2020-06-20\" }, { \"name\": \"thymus_vascular_endothelial_cells.bw\", \"desc\": \"thymus vascular endothelial\", \"url\": \"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/bigwig/thymus_vascular_endothelial_cells.bw\", \"size\": \"120M\", \"type\": \"bw\", \"date\": \"2020-06-20\" }, { \"name\": \"heart_lymphoid_cells.bw\", \"desc\": \"heart lymphoid cells\", \"url\": \"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/bigwig/heart_lymphoid_cells.bw\", \"size\": \"855M\", \"type\": \"bw\", \"date\": \"2020-06-20\" }, { \"name\": \"intestine_myeloid_cells.bw\", \"desc\": \"intestine myeloid cells\", \"url\": \"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/bigwig/intestine_myeloid_cells.bw\", \"size\": \"211M\", \"type\": \"bw\", \"date\": \"2020-06-20\" }, { \"name\": \"lung_myeloid_cells.bw\", \"desc\": \"lung myeloid cells\", \"url\": \"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/bigwig/lung_myeloid_cells.bw\", \"size\": \"109M\", \"type\": \"bw\", \"date\": \"2020-06-20\" }, { \"name\": \"lung_neuroendocrine_cells.bw\", \"desc\": \"lung neuroendocrine cells\", \"url\": \"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/bigwig/lung_neuroendocrine_cells.bw\", \"size\": \"62M\", \"type\": \"bw\", \"date\": \"2020-06-20\" }, { \"name\": \"muscle_stromal_cells.bw\", \"desc\": \"muscle stromal cells\", \"url\": \"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/bigwig/muscle_stromal_cells.bw\", \"size\": \"576M\", \"type\": \"bw\", \"date\": \"2020-06-20\" }, { \"name\": \"muscle_stromal_cells_unsure.bw\", \"desc\": \"muscle stromal cells unsure\", \"url\": \"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/bigwig/muscle_stromal_cells_unsure.bw\", \"size\": \"218M\", \"type\": \"bw\", \"date\": \"2020-06-20\" }, { \"name\": \"pancreas_vascular_endothelial_cells.bw\", \"desc\": \"pancreas vascular endothelial cells\", \"url\": \"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/bigwig/pancreas_vascular_endothelial_cells.bw\", \"size\": \"73M\", \"type\": \"bw\", \"date\": \"2020-06-20\" }, { \"name\": \"placenta_erythroblasts.bw\", \"desc\": \"placenta erythroblasts\", \"url\": \"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/bigwig/placenta_erythroblasts.bw\", \"size\": \"31M\", \"type\": \"bw\", \"date\": \"2020-06-20\" }, { \"name\": \"placenta_extravillous_trophoblasts.bw\", \"desc\": \"placenta extravillous trophoblasts\", \"url\": \"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/bigwig/placenta_extravillous_trophoblasts.bw\", \"size\": \"531M\", \"type\": \"bw\", \"date\": \"2020-06-20\" }, { \"name\": \"placenta_igfbp1_dkk1_positive_cells.bw\", \"desc\": \"placenta igfbp1 dkk1 positive cells\", \"url\": \"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/bigwig/placenta_igfbp1_dkk1_positive_cells.bw\", \"size\": \"184M\", \"type\": \"bw\", \"date\": \"2020-06-20\" }, { \"name\": \"placenta_lymphoid_cells.bw\", \"desc\": \"placenta lymphoid cells\", \"url\": \"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/bigwig/placenta_lymphoid_cells.bw\", \"size\": \"170M\", \"type\": \"bw\", \"date\": \"2020-06-20\" }, { \"name\": \"placenta_myeloid_cells.bw\", \"desc\": \"placenta myeloid cells\", \"url\": \"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/bigwig/placenta_myeloid_cells.bw\", \"size\": \"781M\", \"type\": \"bw\", \"date\": \"2020-06-20\" }, { \"name\": \"placenta_paep_mecom_positive_cells.bw\", \"desc\": \"placenta paep mecom positive cells\", \"url\": \"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/bigwig/placenta_paep_mecom_positive_cells.bw\", \"size\": \"174M\", \"type\": \"bw\", \"date\": \"2020-06-20\" }, { \"name\": \"placenta_smooth_muscle_cells.bw\", \"desc\": \"placenta smooth muscle cells\", \"url\": \"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/bigwig/placenta_smooth_muscle_cells.bw\", \"size\": \"282M\", \"type\": \"bw\", \"date\": \"2020-06-20\" }, { \"name\": \"placenta_stromal_cells.bw\", \"desc\": \"placenta stromal cells\", \"url\": \"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/bigwig/placenta_stromal_cells.bw\", \"size\": \"825M\", \"type\": \"bw\", \"date\": \"2020-06-20\" }, { \"name\": \"placenta_syncytiotrophoblast_and_villous_cytotrophoblasts_unsure.bw\", \"desc\": \"placenta syncytiotrophoblast and villous cytotrophoblasts unsure\", \"url\": \"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/bigwig/placenta_syncytiotrophoblast_and_villous_cytotrophoblasts_unsure.bw\", \"size\": \"2.5G\", \"type\": \"bw\", \"date\": \"2020-06-20\" }, { \"name\": \"placenta_syncytiotrophoblasts_and_villous_cytotrophoblasts.bw\", \"desc\": \"placenta syncytiotrophoblasts and villous cytotrophoblasts\", \"url\": \"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/bigwig/placenta_syncytiotrophoblasts_and_villous_cytotrophoblasts.bw\", \"size\": \"1.2G\", \"type\": \"bw\", \"date\": \"2020-06-20\" }, { \"name\": \"placenta_trophoblast_giant_cells.bw\", \"desc\": \"placenta trophoblast giant cells\", \"url\": \"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/bigwig/placenta_trophoblast_giant_cells.bw\", \"size\": \"1.3G\", \"type\": \"bw\", \"date\": \"2020-06-20\" }, { \"name\": \"placenta_vascular_endothelial_cells.bw\", \"desc\": \"placenta vascular endothelial cells\", \"url\": \"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/bigwig/placenta_vascular_endothelial_cells.bw\", \"size\": \"363M\", \"type\": \"bw\", \"date\": \"2020-06-20\" }, { \"name\": \"spleen_myeloid_cells.bw\", \"desc\": \"spleen myeloid cells\", \"url\": \"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/bigwig/spleen_myeloid_cells.bw\", \"size\": \"57M\", \"type\": \"bw\", \"date\": \"2020-06-20\" }, { \"name\": \"spleen_stromal_cells.bw\", \"desc\": \"spleen stromal cells\", \"url\": \"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/bigwig/spleen_stromal_cells.bw\", \"size\": \"125M\", \"type\": \"bw\", \"date\": \"2020-06-20\" }, { \"name\": \"stomach_vascular_endothelial_cells.bw\", \"desc\": \"stomach vascular endothelial cells\", \"url\": \"https://atlas.fredhutch.org/data/bbi/descartes/human_atac/bigwig/stomach_vascular_endothelial_cells.bw\", \"size\": \"107M\", \"type\": \"bw\", \"date\": \"2020-06-20\" } ]\n}, { \"headline\": \"Fragment Files\", \"desc\": \"Fragment files containing the genomic coordinates (chr, start, end) of each fragment, cell barcode and the number of times this fragment was observed. One file is provided per sample; for most tissues multiple samples were processed. Use the cell metadata file to filter for barcodes of high-quality cells.\", \"columns\":[], \"files\": [{\"name\":\"sample 1 adrenal\",\"desc\":\"sample 1 adrenal\",\"url\":\"https://krishna.gs.washington.edu/content/members/human_ATAC_atlas_website/fragments/sample_1_adrenal.fragments.txt.gz\",\"size\":\"3.5G\",\"type\":\"txt\",\"date\":\"2020-06-20\"},{\"name\":\"sample 2 thymus\",\"desc\":\"sample 2 thymus\",\"url\":\"https://krishna.gs.washington.edu/content/members/human_ATAC_atlas_website/fragments/sample_2_thymus.fragments.txt.gz\",\"size\":\"1.9G\",\"type\":\"txt\",\"date\":\"2020-06-20\"},{\"name\":\"sample 3 kidney\",\"desc\":\"sample 3 kidney\",\"url\":\"https://krishna.gs.washington.edu/content/members/human_ATAC_atlas_website/fragments/sample_3_kidney.fragments.txt.gz\",\"size\":\"5.2G\",\"type\":\"txt\",\"date\":\"2020-06-20\"},{\"name\":\"sample 4 lung\",\"desc\":\"sample 4 lung\",\"url\":\"https://krishna.gs.washington.edu/content/members/human_ATAC_atlas_website/fragments/sample_4_lung.fragments.txt.gz\",\"size\":\"4.3G\",\"type\":\"txt\",\"date\":\"2020-06-20\"},{\"name\":\"sample 5 kidney\",\"desc\":\"sample 5 kidney\",\"url\":\"https://krishna.gs.washington.edu/content/members/human_ATAC_atlas_website/fragments/sample_5_kidney.fragments.txt.gz\",\"size\":\"3.7G\",\"type\":\"txt\",\"date\":\"2020-06-20\"},{\"name\":\"sample 6 cerebrum\",\"desc\":\"sample 6 cerebrum\",\"url\":\"https://krishna.gs.washington.edu/content/members/human_ATAC_atlas_website/fragments/sample_6_cerebrum.fragments.txt.gz\",\"size\":\"4.9G\",\"type\":\"txt\",\"date\":\"2020-06-20\"},{\"name\":\"sample 7 liver\",\"desc\":\"sample 7 liver\",\"url\":\"https://krishna.gs.washington.edu/content/members/human_ATAC_atlas_website/fragments/sample_7_liver.fragments.txt.gz\",\"size\":\"2.6G\",\"type\":\"txt\",\"date\":\"2020-06-20\"},{\"name\":\"sample 8 lung\",\"desc\":\"sample 8 lung\",\"url\":\"https://krishna.gs.washington.edu/content/members/human_ATAC_atlas_website/fragments/sample_8_lung.fragments.txt.gz\",\"size\":\"2.6G\",\"type\":\"txt\",\"date\":\"2020-06-20\"},{\"name\":\"sample 9 liver\",\"desc\":\"sample 9 liver\",\"url\":\"https://krishna.gs.washington.edu/content/members/human_ATAC_atlas_website/fragments/sample_9_liver.fragments.txt.gz\",\"size\":\"3.4G\",\"type\":\"txt\",\"date\":\"2020-06-20\"},{\"name\":\"sample 10 muscle\",\"desc\":\"sample 10 muscle\",\"url\":\"https://krishna.gs.washington.edu/content/members/human_ATAC_atlas_website/fragments/sample_10_muscle.fragments.txt.gz\",\"size\":\"6.7G\",\"type\":\"txt\",\"date\":\"2020-06-20\"},{\"name\":\"sample 12 heart\",\"desc\":\"sample 12 heart\",\"url\":\"https://krishna.gs.washington.edu/content/members/human_ATAC_atlas_website/fragments/sample_12_heart.fragments.txt.gz\",\"size\":\"6.7G\",\"type\":\"txt\",\"date\":\"2020-06-20\"},{\"name\":\"sample 13 placenta\",\"desc\":\"sample 13 placenta\",\"url\":\"https://krishna.gs.washington.edu/content/members/human_ATAC_atlas_website/fragments/sample_13_placenta.fragments.txt.gz\",\"size\":\"5.1G\",\"type\":\"txt\",\"date\":\"2020-06-20\"},{\"name\":\"sample 14 heart\",\"desc\":\"sample 14 heart\",\"url\":\"https://krishna.gs.washington.edu/content/members/human_ATAC_atlas_website/fragments/sample_14_heart.fragments.txt.gz\",\"size\":\"6.0G\",\"type\":\"txt\",\"date\":\"2020-06-20\"},{\"name\":\"sample 15 placenta\",\"desc\":\"sample 15 placenta\",\"url\":\"https://krishna.gs.washington.edu/content/members/human_ATAC_atlas_website/fragments/sample_15_placenta.fragments.txt.gz\",\"size\":\"5.0G\",\"type\":\"txt\",\"date\":\"2020-06-20\"},{\"name\":\"sample 16 adrenal\",\"desc\":\"sample 16 adrenal\",\"url\":\"https://krishna.gs.washington.edu/content/members/human_ATAC_atlas_website/fragments/sample_16_adrenal.fragments.txt.gz\",\"size\":\"2.9G\",\"type\":\"txt\",\"date\":\"2020-06-20\"},{\"name\":\"sample 18 eye\",\"desc\":\"sample 18 eye\",\"url\":\"https://krishna.gs.washington.edu/content/members/human_ATAC_atlas_website/fragments/sample_18_eye.fragments.txt.gz\",\"size\":\"2.8G\",\"type\":\"txt\",\"date\":\"2020-06-20\"},{\"name\":\"sample 19 intestine\",\"desc\":\"sample 19 intestine\",\"url\":\"https://krishna.gs.washington.edu/content/members/human_ATAC_atlas_website/fragments/sample_19_intestine.fragments.txt.gz\",\"size\":\"3.8G\",\"type\":\"txt\",\"date\":\"2020-06-20\"},{\"name\":\"sample 20 kidney\",\"desc\":\"sample 20 kidney\",\"url\":\"https://krishna.gs.washington.edu/content/members/human_ATAC_atlas_website/fragments/sample_20_kidney.fragments.txt.gz\",\"size\":\"3.1G\",\"type\":\"txt\",\"date\":\"2020-06-20\"},{\"name\":\"sample 21 intestine\",\"desc\":\"sample 21 intestine\",\"url\":\"https://krishna.gs.washington.edu/content/members/human_ATAC_atlas_website/fragments/sample_21_intestine.fragments.txt.gz\",\"size\":\"5.3G\",\"type\":\"txt\",\"date\":\"2020-06-20\"},{\"name\":\"sample 22 kidney\",\"desc\":\"sample 22 kidney\",\"url\":\"https://krishna.gs.washington.edu/content/members/human_ATAC_atlas_website/fragments/sample_22_kidney.fragments.txt.gz\",\"size\":\"117M\",\"type\":\"txt\",\"date\":\"2020-06-20\"},{\"name\":\"sample 23 muscle\",\"desc\":\"sample 23 muscle\",\"url\":\"https://krishna.gs.washington.edu/content/members/human_ATAC_atlas_website/fragments/sample_23_muscle.fragments.txt.gz\",\"size\":\"4.7G\",\"type\":\"txt\",\"date\":\"2020-06-20\"},{\"name\":\"sample 24 standard\",\"desc\":\"sample 24 standard\",\"url\":\"https://krishna.gs.washington.edu/content/members/human_ATAC_atlas_website/fragments/sample_24_standard.fragments.txt.gz\",\"size\":\"199M\",\"type\":\"txt\",\"date\":\"2020-06-20\"},{\"name\":\"sample 25 kidney\",\"desc\":\"sample 25 kidney\",\"url\":\"https://krishna.gs.washington.edu/content/members/human_ATAC_atlas_website/fragments/sample_25_kidney.fragments.txt.gz\",\"size\":\"3.5G\",\"type\":\"txt\",\"date\":\"2020-06-20\"},{\"name\":\"sample 26 placenta\",\"desc\":\"sample 26 placenta\",\"url\":\"https://krishna.gs.washington.edu/content/members/human_ATAC_atlas_website/fragments/sample_26_placenta.fragments.txt.gz\",\"size\":\"3.9G\",\"type\":\"txt\",\"date\":\"2020-06-20\"},{\"name\":\"sample 27 adrenal\",\"desc\":\"sample 27 adrenal\",\"url\":\"https://krishna.gs.washington.edu/content/members/human_ATAC_atlas_website/fragments/sample_27_adrenal.fragments.txt.gz\",\"size\":\"4.1G\",\"type\":\"txt\",\"date\":\"2020-06-20\"},{\"name\":\"sample 28 intestine\",\"desc\":\"sample 28 intestine\",\"url\":\"https://krishna.gs.washington.edu/content/members/human_ATAC_atlas_website/fragments/sample_28_intestine.fragments.txt.gz\",\"size\":\"2.0G\",\"type\":\"txt\",\"date\":\"2020-06-20\"},{\"name\":\"sample 29 placenta\",\"desc\":\"sample 29 placenta\",\"url\":\"https://krishna.gs.washington.edu/content/members/human_ATAC_atlas_website/fragments/sample_29_placenta.fragments.txt.gz\",\"size\":\"5.1G\",\"type\":\"txt\",\"date\":\"2020-06-20\"},{\"name\":\"sample 30 placenta\",\"desc\":\"sample 30 placenta\",\"url\":\"https://krishna.gs.washington.edu/content/members/human_ATAC_atlas_website/fragments/sample_30_placenta.fragments.txt.gz\",\"size\":\"1.5G\",\"type\":\"txt\",\"date\":\"2020-06-20\"},{\"name\":\"sample 31 adrenal\",\"desc\":\"sample 31 adrenal\",\"url\":\"https://krishna.gs.washington.edu/content/members/human_ATAC_atlas_website/fragments/sample_31_adrenal.fragments.txt.gz\",\"size\":\"3.8G\",\"type\":\"txt\",\"date\":\"2020-06-20\"},{\"name\":\"sample 32 heart\",\"desc\":\"sample 32 heart\",\"url\":\"https://krishna.gs.washington.edu/content/members/human_ATAC_atlas_website/fragments/sample_32_heart.fragments.txt.gz\",\"size\":\"5.2G\",\"type\":\"txt\",\"date\":\"2020-06-20\"},{\"name\":\"sample 33 lung\",\"desc\":\"sample 33 lung\",\"url\":\"https://krishna.gs.washington.edu/content/members/human_ATAC_atlas_website/fragments/sample_33_lung.fragments.txt.gz\",\"size\":\"3.0G\",\"type\":\"txt\",\"date\":\"2020-06-20\"},{\"name\":\"sample 34 kidney\",\"desc\":\"sample 34 kidney\",\"url\":\"https://krishna.gs.washington.edu/content/members/human_ATAC_atlas_website/fragments/sample_34_kidney.fragments.txt.gz\",\"size\":\"3.7G\",\"type\":\"txt\",\"date\":\"2020-06-20\"},{\"name\":\"sample 35 liver\",\"desc\":\"sample 35 liver\",\"url\":\"https://krishna.gs.washington.edu/content/members/human_ATAC_atlas_website/fragments/sample_35_liver.fragments.txt.gz\",\"size\":\"4.4G\",\"type\":\"txt\",\"date\":\"2020-06-20\"},{\"name\":\"sample 36 cerebrum\",\"desc\":\"sample 36 cerebrum\",\"url\":\"https://krishna.gs.washington.edu/content/members/human_ATAC_atlas_website/fragments/sample_36_cerebrum.fragments.txt.gz\",\"size\":\"5.7G\",\"type\":\"txt\",\"date\":\"2020-06-20\"},{\"name\":\"sample 37 liver\",\"desc\":\"sample 37 liver\",\"url\":\"https://krishna.gs.washington.edu/content/members/human_ATAC_atlas_website/fragments/sample_37_liver.fragments.txt.gz\",\"size\":\"3.5G\",\"type\":\"txt\",\"date\":\"2020-06-20\"},{\"name\":\"sample 38 lung\",\"desc\":\"sample 38 lung\",\"url\":\"https://krishna.gs.washington.edu/content/members/human_ATAC_atlas_website/fragments/sample_38_lung.fragments.txt.gz\",\"size\":\"4.1G\",\"type\":\"txt\",\"date\":\"2020-06-20\"},{\"name\":\"sample 39 heart\",\"desc\":\"sample 39 heart\",\"url\":\"https://krishna.gs.washington.edu/content/members/human_ATAC_atlas_website/fragments/sample_39_heart.fragments.txt.gz\",\"size\":\"5.5G\",\"type\":\"txt\",\"date\":\"2020-06-20\"},{\"name\":\"sample 40 liver\",\"desc\":\"sample 40 liver\",\"url\":\"https://krishna.gs.washington.edu/content/members/human_ATAC_atlas_website/fragments/sample_40_liver.fragments.txt.gz\",\"size\":\"2.5G\",\"type\":\"txt\",\"date\":\"2020-06-20\"},{\"name\":\"sample 41 thymus\",\"desc\":\"sample 41 thymus\",\"url\":\"https://krishna.gs.washington.edu/content/members/human_ATAC_atlas_website/fragments/sample_41_thymus.fragments.txt.gz\",\"size\":\"1.5G\",\"type\":\"txt\",\"date\":\"2020-06-20\"},{\"name\":\"sample 42 heart\",\"desc\":\"sample 42 heart\",\"url\":\"https://krishna.gs.washington.edu/content/members/human_ATAC_atlas_website/fragments/sample_42_heart.fragments.txt.gz\",\"size\":\"841M\",\"type\":\"txt\",\"date\":\"2020-06-20\"},{\"name\":\"sample 43 liver\",\"desc\":\"sample 43 liver\",\"url\":\"https://krishna.gs.washington.edu/content/members/human_ATAC_atlas_website/fragments/sample_43_liver.fragments.txt.gz\",\"size\":\"3.7G\",\"type\":\"txt\",\"date\":\"2020-06-20\"},{\"name\":\"sample 44 lung\",\"desc\":\"sample 44 lung\",\"url\":\"https://krishna.gs.washington.edu/content/members/human_ATAC_atlas_website/fragments/sample_44_lung.fragments.txt.gz\",\"size\":\"4.8G\",\"type\":\"txt\",\"date\":\"2020-06-20\"},{\"name\":\"sample 46 liver\",\"desc\":\"sample 46 liver\",\"url\":\"https://krishna.gs.washington.edu/content/members/human_ATAC_atlas_website/fragments/sample_46_liver.fragments.txt.gz\",\"size\":\"2.4G\",\"type\":\"txt\",\"date\":\"2020-06-20\"},{\"name\":\"sample 47 lung\",\"desc\":\"sample 47 lung\",\"url\":\"https://krishna.gs.washington.edu/content/members/human_ATAC_atlas_website/fragments/sample_47_lung.fragments.txt.gz\",\"size\":\"5.2G\",\"type\":\"txt\",\"date\":\"2020-06-20\"},{\"name\":\"sample 48 standard\",\"desc\":\"sample 48 standard\",\"url\":\"https://krishna.gs.washington.edu/content/members/human_ATAC_atlas_website/fragments/sample_48_standard.fragments.txt.gz\",\"size\":\"4.2G\",\"type\":\"txt\",\"date\":\"2020-06-20\"},{\"name\":\"sample 49 stomach\",\"desc\":\"sample 49 stomach\",\"url\":\"https://krishna.gs.washington.edu/content/members/human_ATAC_atlas_website/fragments/sample_49_stomach.fragments.txt.gz\",\"size\":\"903M\",\"type\":\"txt\",\"date\":\"2020-06-20\"},{\"name\":\"sample 53 eye\",\"desc\":\"sample 53 eye\",\"url\":\"https://krishna.gs.washington.edu/content/members/human_ATAC_atlas_website/fragments/sample_53_eye.fragments.txt.gz\",\"size\":\"291M\",\"type\":\"txt\",\"date\":\"2020-06-20\"},{\"name\":\"sample 54 thymus\",\"desc\":\"sample 54 thymus\",\"url\":\"https://krishna.gs.washington.edu/content/members/human_ATAC_atlas_website/fragments/sample_54_thymus.fragments.txt.gz\",\"size\":\"216M\",\"type\":\"txt\",\"date\":\"2020-06-20\"},{\"name\":\"sample 55 eye\",\"desc\":\"sample 55 eye\",\"url\":\"https://krishna.gs.washington.edu/content/members/human_ATAC_atlas_website/fragments/sample_55_eye.fragments.txt.gz\",\"size\":\"786M\",\"type\":\"txt\",\"date\":\"2020-06-20\"},{\"name\":\"sample 57 spleen\",\"desc\":\"sample 57 spleen\",\"url\":\"https://krishna.gs.washington.edu/content/members/human_ATAC_atlas_website/fragments/sample_57_spleen.fragments.txt.gz\",\"size\":\"777M\",\"type\":\"txt\",\"date\":\"2020-06-20\"},{\"name\":\"sample 58 cerebellum\",\"desc\":\"sample 58 cerebellum\",\"url\":\"https://krishna.gs.washington.edu/content/members/human_ATAC_atlas_website/fragments/sample_58_cerebellum.fragments.txt.gz\",\"size\":\"878M\",\"type\":\"txt\",\"date\":\"2020-06-20\"},{\"name\":\"sample 60 thymus\",\"desc\":\"sample 60 thymus\",\"url\":\"https://krishna.gs.washington.edu/content/members/human_ATAC_atlas_website/fragments/sample_60_thymus.fragments.txt.gz\",\"size\":\"332M\",\"type\":\"txt\",\"date\":\"2020-06-20\"},{\"name\":\"sample 61 pancreas\",\"desc\":\"sample 61 pancreas\",\"url\":\"https://krishna.gs.washington.edu/content/members/human_ATAC_atlas_website/fragments/sample_61_pancreas.fragments.txt.gz\",\"size\":\"1.9G\",\"type\":\"txt\",\"date\":\"2020-06-20\"},{\"name\":\"sample 62 stomach\",\"desc\":\"sample 62 stomach\",\"url\":\"https://krishna.gs.washington.edu/content/members/human_ATAC_atlas_website/fragments/sample_62_stomach.fragments.txt.gz\",\"size\":\"610M\",\"type\":\"txt\",\"date\":\"2020-06-20\"},{\"name\":\"sample 64 cerebrum\",\"desc\":\"sample 64 cerebrum\",\"url\":\"https://krishna.gs.washington.edu/content/members/human_ATAC_atlas_website/fragments/sample_64_cerebrum.fragments.txt.gz\",\"size\":\"483M\",\"type\":\"txt\",\"date\":\"2020-06-20\"},{\"name\":\"sample 65 kidney\",\"desc\":\"sample 65 kidney\",\"url\":\"https://krishna.gs.washington.edu/content/members/human_ATAC_atlas_website/fragments/sample_65_kidney.fragments.txt.gz\",\"size\":\"1.8G\",\"type\":\"txt\",\"date\":\"2020-06-20\"},{\"name\":\"sample 66 cerebrum\",\"desc\":\"sample 66 cerebrum\",\"url\":\"https://krishna.gs.washington.edu/content/members/human_ATAC_atlas_website/fragments/sample_66_cerebrum.fragments.txt.gz\",\"size\":\"2.3G\",\"type\":\"txt\",\"date\":\"2020-06-20\"},{\"name\":\"sample 67 kidney\",\"desc\":\"sample 67 kidney\",\"url\":\"https://krishna.gs.washington.edu/content/members/human_ATAC_atlas_website/fragments/sample_67_kidney.fragments.txt.gz\",\"size\":\"2.2G\",\"type\":\"txt\",\"date\":\"2020-06-20\"},{\"name\":\"sample 68 lung\",\"desc\":\"sample 68 lung\",\"url\":\"https://krishna.gs.washington.edu/content/members/human_ATAC_atlas_website/fragments/sample_68_lung.fragments.txt.gz\",\"size\":\"1.0G\",\"type\":\"txt\",\"date\":\"2020-06-20\"},{\"name\":\"sample 69 cerebrum\",\"desc\":\"sample 69 cerebrum\",\"url\":\"https://krishna.gs.washington.edu/content/members/human_ATAC_atlas_website/fragments/sample_69_cerebrum.fragments.txt.gz\",\"size\":\"2.6G\",\"type\":\"txt\",\"date\":\"2020-06-20\"},{\"name\":\"sample 70 lung\",\"desc\":\"sample 70 lung\",\"url\":\"https://krishna.gs.washington.edu/content/members/human_ATAC_atlas_website/fragments/sample_70_lung.fragments.txt.gz\",\"size\":\"202M\",\"type\":\"txt\",\"date\":\"2020-06-20\"},{\"name\":\"sample 71 cerebrum\",\"desc\":\"sample 71 cerebrum\",\"url\":\"https://krishna.gs.washington.edu/content/members/human_ATAC_atlas_website/fragments/sample_71_cerebrum.fragments.txt.gz\",\"size\":\"3.6G\",\"type\":\"txt\",\"date\":\"2020-06-20\"},{\"name\":\"sample 72 standard\",\"desc\":\"sample 72 standard\",\"url\":\"https://krishna.gs.washington.edu/content/members/human_ATAC_atlas_website/fragments/sample_72_standard.fragments.txt.gz\",\"size\":\"2.4G\",\"type\":\"txt\",\"date\":\"2020-06-20\"}] } ] 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